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If you are using a recent version of OSX there is no /usr/include folder any more.</div>
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However, if you are using homebrew then a stack exchange thread suggested that</div>
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the libxml2&nbsp;<span style="color:rgb(0,0,0); font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt">development files are&nbsp;</span><span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background: var(--white);">found
 in /usr/local/opt/libxml2. &nbsp;Indeed there seems</span></div>
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<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background: var(--white);">to be quite a bit there so .....</span></div>
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Edit the Install script around line 318 to the following and the</div>
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message about libxml2 not found goes away and the enableXML seems</div>
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to have built the library that ESP-r needs ....</div>
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<br>
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<span><br>
</span>
<div># xml support.<br>
</div>
<div>if [ &quot;$xml_support&quot; = &quot;yes&quot; ] || [ &quot;$xml_support&quot; = &quot;prompt&quot; ]; then<br>
</div>
<div>&nbsp; &nbsp;if [ ! -d /usr/include/libxml2 ] &amp;&amp; [ ! -d /usr/local/include/libxml2 ] &amp;&amp; [ ! -d /usr/local/opt/libxml2 ]; then<br>
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<div><br>
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<div>-Jon Hand</div>
<span></span><br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> esp-r-bounces@lists.strath.ac.uk &lt;esp-r-bounces@lists.strath.ac.uk&gt; on behalf of Achim Geissler &lt;achim.geissler@intergga.ch&gt;<br>
<b>Sent:</b> 03 December 2019 20:24<br>
<b>To:</b> ESP-r List &lt;esp-r@lists.strath.ac.uk&gt;<br>
<b>Subject:</b> [esp-r] Re: libxml2 on OS X</font>
<div>&nbsp;</div>
</div>
<div class="" style="word-wrap:break-word; line-break:after-white-space">Hi Christopher,
<div class=""><br class="">
</div>
<div class="">on 10.13 and 10.14 the following worked for me (kind of an extract from my “tips and tricks”):</div>
<div class=""><br class="">
</div>
<div class="">
<div class="" style="color:rgb(34,34,34); font-variant-ligatures:normal; orphans:2; widows:2; background-color:rgb(255,255,255)">
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">=== Check</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">/usr/include/</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">drwxr-xr-x&nbsp; &nbsp;&nbsp;4 root&nbsp;&nbsp;wheel&nbsp; &nbsp; &nbsp;&nbsp;128 Oct 31 12:37 libxml2</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">drwxr-xr-x&nbsp;&nbsp;&nbsp;23 root&nbsp;&nbsp;wheel&nbsp; &nbsp; &nbsp;&nbsp;736 Oct 31 12:37 libxslt</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">=== missing /usr/include? (OSX 10.14)</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;"><span class="x_s1" style=""><a href="https://embeddedartistry.com/blog/2018/11/14/missing-usrinclude-after-updating-to-osx-1014-try-this-fix" class="" style="color:rgb(0,134,229)">https://embeddedartistry.com/blog/2018/11/14/missing-usrinclude-after-updating-to-osx-1014-try-this-fix</a></span></p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">For legacy software that looks for the macOS headers in the base system under /usr/include, please install the package file located at: /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.
 pkg</p>
<p class="x_p2" style="margin-top: 0px; margin-bottom: 0px;">((found by searching for &quot;OSX 10.14 /usr/include missing&quot;))</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">=== Check</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">/usr/</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">lrwxr-xr-x&nbsp; &nbsp;&nbsp;1 root&nbsp;&nbsp;wheel&nbsp; &nbsp; &nbsp;&nbsp;8 Apr 26&nbsp;&nbsp;2018 X11 -&gt; /opt/X11</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">lrwxr-xr-x&nbsp; &nbsp;&nbsp;1 root&nbsp;&nbsp;wheel&nbsp; &nbsp; &nbsp;&nbsp;8 Apr 26&nbsp;&nbsp;2018 X11R6 -&gt; /opt/X11</p>
<div class="" style="">&nbsp;<br class="x_webkit-block-placeholder">
</div>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">If all X11 libraries are already installed via XQuark, then O.K., otherwise likely&nbsp;</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;"><span class="" style="">$ sudo port install xorg-libX11</span></p>
<p class="x_p2" style="margin-top: 0px; margin-bottom: 0px;">must be run.</p>
<div class="" style="">&nbsp;<br class="x_webkit-block-placeholder">
</div>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">=== Check</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">/opt/X11/include</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">…</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">lrwxr-xr-x&nbsp; &nbsp;&nbsp;1 root&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;wheel&nbsp;&nbsp; &nbsp;&nbsp;18 Dec&nbsp;&nbsp;7 16:37 freetype -&gt; freetype2/freetype</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">drwxr-xr-x&nbsp; &nbsp;&nbsp;5 root&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;wheel&nbsp; &nbsp;&nbsp;160 Dec&nbsp;&nbsp;7 15:20 freetype2</p>
<p class="x_p3" style="margin-top: 0px; margin-bottom: 0px;">lrwxr-xr-x&nbsp; &nbsp;&nbsp;1 root&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;wheel&nbsp;&nbsp; &nbsp;&nbsp;20 Dec&nbsp;&nbsp;7 15:27 ft2build.h -&gt; freetype2/ft2build.h</p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">…</p>
</div>
<div class="" style="color:rgb(34,34,34); font-variant-ligatures:normal; orphans:2; widows:2; background-color:rgb(255,255,255)">
These links are necessary for&nbsp;ESP-r new fonts (V13.2.8&#43;). If not set, then (in /opt/X11/include) do</div>
<div class="" style="color:rgb(34,34,34); font-variant-ligatures:normal; orphans:2; widows:2; background-color:rgb(255,255,255)">
<div class="" style="">&nbsp;<br class="x_webkit-block-placeholder">
</div>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;"><span class="x_s1" style="">$ sudo ln -sf freetype2/freetype freetype</span></p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;"><span class="x_s1" style="">and</span></p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;"><span class="x_s1" style="">$ sudo ln -sf freetype2/ft2build.h ft2build.h</span></p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;"><span class="x_s1" style="">Both symlinks seem necessary!</span></p>
<p class="x_p1" style="margin-top: 0px; margin-bottom: 0px;">The path to /opt/esp-r/bin must be set (ideally both in .bashrc and .bash_profile)</p>
<div class="">===============</div>
<div class=""><br class="">
</div>
</div>
<div>Best</div>
<div>Achim</div>
<div><br class="">
</div>
<div><br class="">
<blockquote type="cite" class="">
<div class="">On 2 Dec 2019, at 22:38, Christopher Heard &lt;<a href="mailto:cheard@prodigy.net.mx" class="">cheard@prodigy.net.mx</a>&gt; wrote:</div>
<br class="x_Apple-interchange-newline">
<div class="">
<div class="" style="word-wrap:break-word; line-break:after-white-space">Hello all,
<div class="">&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;on using the Install option —xml I get the following</div>
<div class=""><br class="">
</div>
<div class="">
<div class="">&nbsp;Error: libxml2 library not found in /usr/include</div>
<div class="">&nbsp;or /usr/local/include. Support for xml output will be</div>
<div class="">&nbsp;disabled but the rest of the installation will</div>
<div class="">&nbsp;proceed normally.</div>
<div class=""><br class="">
</div>
<div class="">I have found the libxml2-2.9.1 folder in&nbsp;Macintosh HD⁩ ▸ ⁨opt⁩ ▸ ⁨local⁩ ▸ ⁨share⁩ ▸ ⁨doc⁩ and copied it to /usr/local/include but the installer still gives the same error message.</div>
<div class=""><br class="">
</div>
<div class="">If I rename the copy to simply libxml2, will this work or do I need to use an earlier version?</div>
<div class=""><br class="">
</div>
<div class="">At least on re-running the Install with the following:</div>
<div class=""><br class="">
</div>
<div class="">bash-3.2$ sudo ./Install -d /opt/esru --gcc4 --reuse_ish_calcs --complex --xml --force --compiler_version -6</div>
<div class=""><br class="">
</div>
<div class="">The &quot;--compiler_version -6” is because I am using homebrew as the package manager.</div>
<div class=""><br class="">
</div>
<div class="">It does say that it is including xml support (after renaming the folder &nbsp;libxml2-2.9.1 to &nbsp;libxml2).</div>
<div class=""><br class="">
</div>
<div class="">I <b class="">do</b> get an error message at the start &quot;./Install: line 334: ldconfig: command not found”</div>
<div class=""><br class="">
</div>
<div class="">Line 334 is:&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; ld_output=`ldconfig -p | grep libxslt`</div>
<div class=""><br class="">
</div>
<div class="">As far as I can Google, it seems that ldconfig is not available in OS X and neither is it needed.</div>
<div class=""><br class="">
</div>
<div class="">Can anyone confirm this?</div>
<div class=""><br class="">
</div>
<div class="">Christopher Heard</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On 29 Oct 2019, at 11:30, <a href="mailto:esp-r-request@lists.strath.ac.uk" class="">
esp-r-request@lists.strath.ac.uk</a> wrote:</div>
<br class="x_Apple-interchange-newline">
<div class="">
<div class="">Send esp-r mailing list submissions to<br class="">
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<br class="">
To subscribe or unsubscribe via the World Wide Web, visit<br class="">
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or, via email, send a message with subject or body 'help' to<br class="">
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<br class="">
You can reach the person managing the list at<br class="">
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When replying, please edit your Subject line so it is more specific<br class="">
than &quot;Re: Contents of esp-r digest...&quot;<br class="">
<br class="">
<br class="">
Today's Topics:<br class="">
<br class="">
&nbsp;&nbsp;1. &nbsp;Problem on plant database compilation...<br class="">
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;(Clodoaldo Carvalho Filho)<br class="">
&nbsp;&nbsp;2. Re: Problem on plant database compilation... (Jon Hand)<br class="">
<br class="">
<br class="">
----------------------------------------------------------------------<br class="">
<br class="">
Message: 1<br class="">
Date: Tue, 29 Oct 2019 13:34:13 -0300<br class="">
From: Clodoaldo Carvalho Filho &lt;clodoaldo@ufc.br&gt;<br class="">
Subject: [esp-r] &nbsp;Problem on plant database compilation...<br class="">
To: esp-r@lists.strath.ac.uk<br class="">
Message-ID:<br class="">
<span class="x_Apple-tab-span" style="white-space:pre"></span>&lt;CALTyuFQiaE1U08jVUzpu2PXzQjexyULAjmDf_NXiQLi9KATghA@mail.gmail.com&gt;<br class="">
Content-Type: text/plain; charset=&quot;utf-8&quot;<br class="">
<br class="">
Hello everyone,<br class="">
<br class="">
I'm trying to compile esp-r v.13.3.7 source code on Unbutu 18.04 LTS with<br class="">
gcc and GNU Fortran 8.3.0. The whole process seems to run OK except for pdb<br class="">
and plant databases.<br class="">
<br class="">
This is the output I got:<br class="">
<br class="">
- installing plant components databases ...At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f2d855be70d in ???<br class="">
#1 &nbsp;0x7f2d855bf235 in ???<br class="">
#2 &nbsp;0x7f2d855bfc9b in ???<br class="">
#3 &nbsp;0x7f2d857e1168 in ???<br class="">
#4 &nbsp;0x7f2d857ed035 in ???<br class="">
#5 &nbsp;0x7f2d857e466c in ???<br class="">
#6 &nbsp;0x7f2d857e482b in ???<br class="">
#7 &nbsp;0x7f2d857e1035 in ???<br class="">
#8 &nbsp;0x564573b59b48 in ???<br class="">
#9 &nbsp;0x564573b5c902 in ???<br class="">
#10 &nbsp;0x7f2d84c19b96 in ???<br class="">
#11 &nbsp;0x564573b4e129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.db1': Arquivo ou diret?rio<br class="">
inexistente<br class="">
At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f0da1cb270d in ???<br class="">
#1 &nbsp;0x7f0da1cb3235 in ???<br class="">
#2 &nbsp;0x7f0da1cb3c9b in ???<br class="">
#3 &nbsp;0x7f0da1ed5168 in ???<br class="">
#4 &nbsp;0x7f0da1ee1035 in ???<br class="">
#5 &nbsp;0x7f0da1ed866c in ???<br class="">
#6 &nbsp;0x7f0da1ed882b in ???<br class="">
#7 &nbsp;0x7f0da1ed5035 in ???<br class="">
#8 &nbsp;0x55928feafb48 in ???<br class="">
#9 &nbsp;0x55928feb2902 in ???<br class="">
#10 &nbsp;0x7f0da130db96 in ???<br class="">
#11 &nbsp;0x55928fea4129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.db2': Arquivo ou diret?rio<br class="">
inexistente<br class="">
At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f832a5a370d in ???<br class="">
#1 &nbsp;0x7f832a5a4235 in ???<br class="">
#2 &nbsp;0x7f832a5a4c9b in ???<br class="">
#3 &nbsp;0x7f832a7c6168 in ???<br class="">
#4 &nbsp;0x7f832a7d2035 in ???<br class="">
#5 &nbsp;0x7f832a7c966c in ???<br class="">
#6 &nbsp;0x7f832a7c982b in ???<br class="">
#7 &nbsp;0x7f832a7c6035 in ???<br class="">
#8 &nbsp;0x55af8857cb48 in ???<br class="">
#9 &nbsp;0x55af8857f902 in ???<br class="">
#10 &nbsp;0x7f8329bfeb96 in ???<br class="">
#11 &nbsp;0x55af88571129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.tt': Arquivo ou diret?rio<br class="">
inexistente<br class="">
done.<br class="">
<br class="">
I experience the same problem when installing the precompiled version<br class="">
downloaded from ESRU.<br class="">
<br class="">
Any help would be appreciated.<br class="">
<br class="">
Regards,<br class="">
<br class="">
Clodoaldo.<br class="">
--<br class="">
*Prof. Clodoaldo de O. Carvalho Filho, Dr.*<br class="">
Universidade Federal do Cear?<br class="">
Depto. de Engenharia Mec?nica<br class="">
Lab. de Efici?ncia Energ?tica no Conforto Ambiental - Coordenador<br class="">
PET Engenharia Mec?nica - Tutor<br class="">
ASHRAE Fortaleza Student Branch - Advisor<br class="">
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------------------------------<br class="">
<br class="">
Message: 2<br class="">
Date: Tue, 29 Oct 2019 17:00:29 &#43;0000<br class="">
From: Jon Hand &lt;jon@esru.strath.ac.uk&gt;<br class="">
Subject: [esp-r] Re: Problem on plant database compilation...<br class="">
To: Clodoaldo Carvalho Filho &lt;clodoaldo@ufc.br&gt;,<br class="">
<span class="x_Apple-tab-span" style="white-space:pre"></span>&quot;esp-r@lists.strath.ac.uk&quot;<span class="x_Apple-tab-span" style="white-space:pre">
</span>&lt;esp-r@lists.strath.ac.uk&gt;<br class="">
Message-ID:<br class="">
<span class="x_Apple-tab-span" style="white-space:pre"></span>&lt;D30AFF4D10A0B64490B23B07B41010D4DC6F2A44@EX2010-MBX3.ds.strath.ac.uk&gt;<br class="">
Content-Type: text/plain; charset=&quot;iso-8859-1&quot;<br class="">
<br class="">
<br class="">
This is a string buffer overflow that is happening while writing<br class="">
the title of the application. &nbsp;To correct this open up the file<br class="">
pdb.F in a text editor and look for a string variable named pagestitle<br class="">
change its definition to the following and this should fix the issue.<br class="">
<br class="">
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;character pagestitle*112 ! for banner title via epages call<br class="">
<br class="">
You then need to re-compile the pdb application. <br class="">
<br class="">
Regards, Jon Hand<br class="">
________________________________________<br class="">
From: esp-r-bounces@lists.strath.ac.uk [esp-r-bounces@lists.strath.ac.uk] on behalf of Clodoaldo Carvalho Filho [clodoaldo@ufc.br]<br class="">
Sent: 29 October 2019 16:34<br class="">
To: esp-r@lists.strath.ac.uk<br class="">
Subject: [esp-r] &nbsp;Problem on plant database compilation...<br class="">
<br class="">
Hello everyone,<br class="">
<br class="">
I'm trying to compile esp-r v.13.3.7 source code on Unbutu 18.04 LTS with gcc and GNU Fortran 8.3.0. The whole process seems to run OK except for pdb and plant databases.<br class="">
<br class="">
This is the output I got:<br class="">
<br class="">
- installing plant components databases ...At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f2d855be70d in ???<br class="">
#1 &nbsp;0x7f2d855bf235 in ???<br class="">
#2 &nbsp;0x7f2d855bfc9b in ???<br class="">
#3 &nbsp;0x7f2d857e1168 in ???<br class="">
#4 &nbsp;0x7f2d857ed035 in ???<br class="">
#5 &nbsp;0x7f2d857e466c in ???<br class="">
#6 &nbsp;0x7f2d857e482b in ???<br class="">
#7 &nbsp;0x7f2d857e1035 in ???<br class="">
#8 &nbsp;0x564573b59b48 in ???<br class="">
#9 &nbsp;0x564573b5c902 in ???<br class="">
#10 &nbsp;0x7f2d84c19b96 in ???<br class="">
#11 &nbsp;0x564573b4e129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.db1': Arquivo ou diret?rio inexistente<br class="">
At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f0da1cb270d in ???<br class="">
#1 &nbsp;0x7f0da1cb3235 in ???<br class="">
#2 &nbsp;0x7f0da1cb3c9b in ???<br class="">
#3 &nbsp;0x7f0da1ed5168 in ???<br class="">
#4 &nbsp;0x7f0da1ee1035 in ???<br class="">
#5 &nbsp;0x7f0da1ed866c in ???<br class="">
#6 &nbsp;0x7f0da1ed882b in ???<br class="">
#7 &nbsp;0x7f0da1ed5035 in ???<br class="">
#8 &nbsp;0x55928feafb48 in ???<br class="">
#9 &nbsp;0x55928feb2902 in ???<br class="">
#10 &nbsp;0x7f0da130db96 in ???<br class="">
#11 &nbsp;0x55928fea4129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.db2': Arquivo ou diret?rio inexistente<br class="">
At line 192 of file pdb.F<br class="">
Fortran runtime error: End of record<br class="">
<br class="">
Error termination. Backtrace:<br class="">
#0 &nbsp;0x7f832a5a370d in ???<br class="">
#1 &nbsp;0x7f832a5a4235 in ???<br class="">
#2 &nbsp;0x7f832a5a4c9b in ???<br class="">
#3 &nbsp;0x7f832a7c6168 in ???<br class="">
#4 &nbsp;0x7f832a7d2035 in ???<br class="">
#5 &nbsp;0x7f832a7c966c in ???<br class="">
#6 &nbsp;0x7f832a7c982b in ???<br class="">
#7 &nbsp;0x7f832a7c6035 in ???<br class="">
#8 &nbsp;0x55af8857cb48 in ???<br class="">
#9 &nbsp;0x55af8857f902 in ???<br class="">
#10 &nbsp;0x7f8329bfeb96 in ???<br class="">
#11 &nbsp;0x55af88571129 in ???<br class="">
#12 &nbsp;0xffffffffffffffff in ???<br class="">
mv: n?o foi poss?vel obter estado de 'plantc.tt&lt;http://plantc.tt&gt;': Arquivo ou diret?rio inexistente<br class="">
done.<br class="">
<br class="">
I experience the same problem when installing the precompiled version downloaded from ESRU.<br class="">
<br class="">
Any help would be appreciated.<br class="">
<br class="">
Regards,<br class="">
<br class="">
Clodoaldo.<br class="">
--<br class="">
Prof. Clodoaldo de O. Carvalho Filho, Dr.<br class="">
Universidade Federal do Cear?<br class="">
Depto. de Engenharia Mec?nica<br class="">
Lab. de Efici?ncia Energ?tica no Conforto Ambiental - Coordenador<br class="">
PET Engenharia Mec?nica - Tutor<br class="">
ASHRAE Fortaleza Student Branch - Advisor<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
------------------------------<br class="">
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End of esp-r Digest, Vol 149, Issue 2<br class="">
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